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Archive for Monday, September 3, 2007

Human Genome Project beginning to bear fruit

September 3, 2007

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— Four years ago, scientists triumphantly announced that they'd finished reading the entire human genome - the 3 billion "letters" of DNA that are the instruction manual for making a person.

Trouble was, they didn't know how to make sense of the bewildering clutter of A's, C's, G's and T's in the so-called "book of life."

Now the genome project is beginning to bear fruit. A bumper crop of fresh discoveries connects specific bits of DNA to numerous diseases, including cancer, diabetes, blindness and AIDS.

New findings are being published almost weekly in scientific journals. Scientists say they're important steps toward future treatments or cures.

"A whole series of studies is coming down the pike," Teri Manolio, a geneticist at the National Human Genome Research Institute in Bethesda, Md., said at a genome conference in Boston this summer. "This is an unprecedented opportunity to apply genetics to disease."

The latest discovery is a report published in the journal Nature on Sunday declaring that two tiny changes in human DNA may add more than an inch to an individual's height.

An Aug. 2 paper in The New England Journal of Medicine identified other DNA variants that may predispose a person to a heart attack. Armed with such knowledge, doctors can recommend changes in lifestyle, such as losing weight and stopping smoking, that could save a patient's life.

Discoveries

These discoveries are the product of a booming new area of genetic research known as "Genome-Wide Association" studies. GWA researchers are taking advantage of two developments since the completion of the Human Genome project in 2003.

¢ New technologies that allow them to survey as many as 500,000 bits of DNA at once. This makes it possible to scan a person's entire genome rapidly and cheaply, instead of laboriously studying one gene at a time.

¢ A catalog called the HapMap, completed in October 2005, that lists 11 million tiny variations in the human genome, such as an "A" where there should be a "T." Even such a small change can drastically alter a gene's function.

GWA researchers use powerful computer programs to compare the genomes of tens of thousands of people - half of them sick and half well - trying to spot the subtle differences that may lie behind a disease. Changes in the height gene, for example, were discovered after British researchers scanned the DNA of 24,000 people.

'Mining genomic data'

Aravinda Chakravarti, a geneticist at the Johns Hopkins University School of Medicine in Baltimore, likened the process to "panning for gold."

"We're mining genomic data," said Deborah Nickerson, a researcher at the University of Washington in Seattle. "We're finding variations in the human genome that make it possible to do experiments that we wouldn't dream were possible a few years ago. It's very exciting (but) it's just the tip of the iceberg."

The detection of a DNA variant related to a disease doesn't mean that a cure is just around the corner. Some variants raise the risk of disease only slightly, and multiple genes are usually involved in complex diseases. The variant itself may not be to blame, but it shows the location along a strand of DNA where the trouble lies, helping researchers find the culprit.

The current wave of GWA discoveries began with a March 2005 report on a gene variant associated with macular degeneration, the most common cause of blindness in the elderly.

Last September, mutations linked to breast and colon cancer were reported. In October, a variant showed up in a gene linked to memory. In December, it was the turn of inflammatory bowel disease. April saw a flurry of reports on prostate cancer, obesity and heart disease.

In June, rheumatoid arthritis, hypertension, bipolar disorder, type 1 and type 2 diabetes, and coronary heart disease were added to the list. In July, GWA researchers identified three gene variants associated with HIV and AIDS.

"This is a new dawn in the genetics of common human diseases," said Peter Donnelly, the leader of a GWA research team at Oxford University in England.

Pharmaceutical companies are already using the insights to explore possible new drugs, according to Human Genome Research Institute Director Francis Collins.

"This could be a totally new way to approach disease," Collins said.

Comments

bearded_gnome 7 years, 3 months ago

very interesting, and brings a huge set of ethical challenges along with it. for example, if by genetic testing parents know their child will be born with a disability. do they choose anyway. in the future will the government mandate their choice? that is, to order them to have an enforced abortion to prevent extra costs for the society?

mick 7 years, 3 months ago

Making a correlation between a gene and a condition is not science. Where is the mechanism for causation? This will go nowhere until they can explain that.

denak 7 years, 3 months ago

As a person who is a carrier for a genetic form of blindness, I think this is exciting. This could open up all kinds of doors for gene therapy. For years, they have been working on ways to cure or minimize the effects of Sickle Cell Anemia. The more knowledge we have of our DNA and how it works, the better our health will be in the long run.

As for the naysayers, it should be noted that there were people who objected to blood transfusions, vaccines, autopsies, and organ transplants when they were first tried. Now, they are all considered common place and hundreds of lives have been saved.

So, I think this is great!

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